STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100698083RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events. (382 aa)    
Predicted Functional Partners:
ENSONIP00000032775
annotation not available
  
 
 0.592
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.588
LOC100709252
RRM domain-containing protein.
  
 
 0.585
LOC100703764
Cytotoxic granule-associated RNA binding protein 1, like.
  
 
 0.582
tial1
TIA1 cytotoxic granule-associated RNA binding protein-like 1.
  
 
 0.581
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.580
tia1
TIA1 cytotoxic granule-associated RNA binding protein.
  
 
 0.570
LOC100710029
ELAV-like protein; Belongs to the RRM elav family.
  
 0.562
Elavl3
ELAV-like protein; Belongs to the RRM elav family.
  
 0.562
Zmat5
Zinc finger, matrin-type 5.
    
 0.561
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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