STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
setd3Protein-histidine N-methyltransferase. (657 aa)    
Predicted Functional Partners:
I3KAI1_ORENI
Nuclear receptor binding SET domain protein 3.
     
 0.670
bccip
Protein BCCIP homolog; Belongs to the BCP1 family.
   
 
 0.669
LOC100698471
SET domain and mariner transposase fusion gene.
     
 0.648
mindy1
MINDY lysine 48 deubiquitinase 1.
    
 0.622
mmaa
Metabolism of cobalamin associated A.
    
 0.622
mindy2
Ubiquitin carboxyl-terminal hydrolase MINDY-2 isoform X1.
    
 0.622
I3JTS7_ORENI
Lysine (K)-specific methyltransferase 2Cb.
     
 0.620
kmt2d
Lysine (K)-specific methyltransferase 2D.
     
 0.620
ENSONIP00000056910
LOW QUALITY PROTEIN: histone-lysine N-methyltransferase 2C.
     
 0.620
LOC100692647
SET domain containing 1B, histone lysine methyltransferase a.
     
 0.606
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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