STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100696808JAZF zinc finger 1. (243 aa)    
Predicted Functional Partners:
sympk
Symplekin.
    
 
 0.792
trrap
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.727
meaf6
MYST/Esa1-associated factor 6.
    
 
 0.681
twf2
WD repeat domain 82.
    
 
 0.679
LOC100709494
Twinfilin actin-binding protein 2b.
    
 
 0.679
LOC100705506
Transmembrane protein 240a.
    
 
 0.630
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
    
 
 0.630
fndc10
Fibronectin type III domain-containing protein 10.
    
 
 0.630
Tmem240
Transmembrane protein 240 isoform X2.
    
 
 0.630
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
    
 
 0.604
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.