I3KN17_ORENI protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I3KN17_ORENI

Adrenoceptor alpha 1Ba. (576 aa)

Predicted Functional Partners:

gna12

0.946

LOC100701321

0.946

LOC100712037

0.946

LOC100697949

0.937

LOC100709052

0.937

LOC100706405

0.917

LOC100697855

0.787

LOC100711838

0.780

LOC100706143

0.709

LOC100702054

0.638

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I3KN17_ORENI	LOC100697855	ENSONIP00000030761	ENSONIP00000074888	Adrenoceptor alpha 1Ba.	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.787
I3KN17_ORENI	LOC100697949	ENSONIP00000030761	ENSONIP00000018774	Adrenoceptor alpha 1Ba.	Uncharacterized protein.	0.937
I3KN17_ORENI	LOC100701321	ENSONIP00000030761	ENSONIP00000009912	Adrenoceptor alpha 1Ba.	Guanine nucleotide binding protein (G protein), alpha 13b.	0.946
I3KN17_ORENI	LOC100702054	ENSONIP00000030761	ENSONIP00000003304	Adrenoceptor alpha 1Ba.	Guanine nucleotide binding protein (G protein), beta 5b.	0.638
I3KN17_ORENI	LOC100706143	ENSONIP00000030761	ENSONIP00000009535	Adrenoceptor alpha 1Ba.	Guanine nucleotide binding protein (G protein), alpha 14.	0.709
I3KN17_ORENI	LOC100706405	ENSONIP00000030761	ENSONIP00000009536	Adrenoceptor alpha 1Ba.	Uncharacterized protein.	0.917
I3KN17_ORENI	LOC100709052	ENSONIP00000030761	ENSONIP00000080347	Adrenoceptor alpha 1Ba.	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.937
I3KN17_ORENI	LOC100711838	ENSONIP00000030761	ENSONIP00000054089	Adrenoceptor alpha 1Ba.	Guanine nucleotide-binding protein subunit alpha-14 isoform X1.	0.780
I3KN17_ORENI	LOC100712037	ENSONIP00000030761	ENSONIP00000010080	Adrenoceptor alpha 1Ba.	Uncharacterized protein.	0.946
I3KN17_ORENI	gna12	ENSONIP00000030761	ENSONIP00000004108	Adrenoceptor alpha 1Ba.	G protein subunit alpha 12.	0.946
LOC100697855	I3KN17_ORENI	ENSONIP00000074888	ENSONIP00000030761	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	Adrenoceptor alpha 1Ba.	0.787
LOC100697855	LOC100697949	ENSONIP00000074888	ENSONIP00000018774	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	Uncharacterized protein.	0.476
LOC100697855	LOC100702054	ENSONIP00000074888	ENSONIP00000003304	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	Guanine nucleotide binding protein (G protein), beta 5b.	0.787
LOC100697855	LOC100709052	ENSONIP00000074888	ENSONIP00000080347	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.479
LOC100697855	LOC100711838	ENSONIP00000074888	ENSONIP00000054089	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	Guanine nucleotide-binding protein subunit alpha-14 isoform X1.	0.475
LOC100697949	I3KN17_ORENI	ENSONIP00000018774	ENSONIP00000030761	Uncharacterized protein.	Adrenoceptor alpha 1Ba.	0.937
LOC100697949	LOC100697855	ENSONIP00000018774	ENSONIP00000074888	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 15 (Gq class), tandem duplicate 4.	0.476
LOC100697949	LOC100702054	ENSONIP00000018774	ENSONIP00000003304	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta 5b.	0.796
LOC100697949	LOC100706405	ENSONIP00000018774	ENSONIP00000009536	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC100697949	LOC100709052	ENSONIP00000018774	ENSONIP00000080347	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.910