STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
baz1bBromodomain adjacent to zinc finger domain, 1B. (1646 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.990
tubgcp5
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
      
 0.832
Mybbp1a
MYB binding protein (P160) 1a.
    
 0.810
ercc6
Excision repair cross-complementation group 6.
    
 0.808
Chd1l
Chromodomain helicase DNA binding protein 1-like.
    
 0.788
LOC100692760
Protein DEK isoform X2.
    
 0.776
hells
Helicase, lymphoid specific.
    
 0.772
nipa2
NIPA magnesium transporter 2.
      
 0.770
ddx21
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
   
 
 0.765
polr1e
RNA polymerase I subunit E.
    
 0.760
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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