STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100698925Xin actin binding repeat containing 2a. (3404 aa)    
Predicted Functional Partners:
wdr18
WD repeat domain 18.
   
 0.640
csrp3
Cysteine and glycine-rich protein 3 (cardiac LIM protein).
   
 
 0.614
tex10
Testis expressed 10.
   
 0.596
pes1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.571
LOC100696264
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.543
GRXCR2
Glutaredoxin and cysteine rich domain containing 2.
     
 0.444
Pjvk
Pejvakin.
     
 0.439
dusp27
Dual specificity phosphatase 27; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
  
 
 0.434
actn3
Actinin alpha 3b.
   
 0.434
LOC100696265
Actinin, alpha 1.
   
 0.434
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.