STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sys1Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (156 aa)    
Predicted Functional Partners:
arfrp1
ADP-ribosylation factor related protein 1.
   
 
 0.876
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
     
 0.753
vps52
VPS52 subunit of GARP complex.
     
 0.721
cog3
Component of oligomeric golgi complex 3.
     
 0.663
cog1
Component of oligomeric golgi complex 1.
   
 
 0.652
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
     
 0.647
gcc1
GRIP and coiled-coil domain containing 1.
     
 0.636
cog7
Component of oligomeric golgi complex 7.
     
 0.634
stx16
Syntaxin 16; Belongs to the syntaxin family.
     
 0.626
tmf1
TATA element modulatory factor 1.
     
 0.622
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.