STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
metap1dMethionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (347 aa)    
Predicted Functional Partners:
LOC100702604
Zgc:92275.
  
 
 0.936
iyd
Iodotyrosine deiodinase.
  
 
 0.934
etfb
Electron transfer flavoprotein subunit beta.
  
 
 0.922
etfa
Electron transfer flavoprotein subunit alpha.
   
 
 0.836
FDX1
Ferredoxin 1.
  
 
 0.810
fdx2
Ferredoxin 2.
  
 
 0.810
Cryl1
Crystallin, lambda 1.
  
 
 0.771
hadh
Uncharacterized protein.
  
 
 0.771
I3JJ40_ORENI
SAP domain-containing protein.
  
  
 0.751
LOC100711605
Malate synthase-like.
   
 
 0.734
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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