STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tia1TIA1 cytotoxic granule-associated RNA binding protein. (406 aa)    
Predicted Functional Partners:
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.812
cstf3
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 0.773
snrpe
Small nuclear ribonucleoprotein E.
   
 0.773
LOC100706148
FIP1 like 1b (S. cerevisiae).
   
 0.766
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.763
sympk
Symplekin.
   
 0.760
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.756
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.753
Snrpf
Small nuclear ribonucleoprotein F.
   
 0.752
Snrpg
Small nuclear ribonucleoprotein G.
   
 0.745
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.