STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100709763Ribosome binding protein 1a. (1163 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.759
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.696
I3J2M6_ORENI
Ribosomal protein L36A; Belongs to the eukaryotic ribosomal protein eL42 family.
   
  
 0.692
Rpl12
Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.690
rps9
Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
    
 
 0.646
Rpl39
Large subunit ribosomal protein L39e.
      
 0.636
rpp21
Ribonuclease P 21 subunit.
      
 0.611
synj2bp
Synaptojanin-2-binding protein isoform X1.
    
 0.607
I3KKT2_ORENI
Signal peptidase complex subunit 2.
   
  
 0.595
LOC100692890
RAN binding protein 2.
    
 0.588
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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