STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100692734Nuclear receptor binding SET domain protein 1a. (2550 aa)    
Predicted Functional Partners:
LOC100699058
Fe2OG dioxygenase domain-containing protein.
    
 0.687
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
    
 0.687
camkmt
Calmodulin-lysine N-methyltransferase.
     
 0.680
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 0.618
eed
Embryonic ectoderm development.
   
 0.611
LOC109203640
Histone H2A; Belongs to the histone H2A family.
    
  0.600
LOC100701651
Histone H2A; Belongs to the histone H2A family.
    
  0.600
ENSONIP00000040408
annotation not available
    
  0.600
LOC100693699
Histone H2A; Belongs to the histone H2A family.
    
  0.600
smg1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
   
 0.584
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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