STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102081076CortBP2 domain-containing protein. (1028 aa)    
Predicted Functional Partners:
trappc1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.784
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.783
TRAPPC2
Trafficking protein particle complex 2.
    
 0.781
trappc8
Trafficking protein particle complex 8.
    
 0.766
LOC102079881
Lebercilin LCA5.
    
 0.749
trappc3
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.749
uso1
USO1 vesicle transport factor.
   
 0.722
TRAPPC5
Trafficking protein particle complex 5.
    
 0.701
trappc5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.701
LOC100704500
Trafficking protein particle complex 6b-like.
    
 0.682
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.