STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100699181Uncharacterized protein. (1175 aa)    
Predicted Functional Partners:
cntnap1
Contactin associated protein 1.
   
 0.958
cntn1
Contactin 1b.
    
0.958
CNTN1
Contactin 1.
    
0.958
nfasc
Neurofascin homolog (chicken) a.
  
  
 
0.901
LOC100702149
Receptor-type tyrosine-protein phosphatase.
    
 0.571
ptpre
Receptor-type tyrosine-protein phosphatase.
    
 0.571
LOC100705237
Carbonic anhydrase XVI b.
    
 0.567
I3J835_ORENI
Ankyrin 1, erythrocytic b.
    
 0.564
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.550
I3KXH4_ORENI
HTH_Tnp_Tc3_2 domain-containing protein.
    
 0.541
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.