STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col8a2Collagen, type VIII, alpha 2. (688 aa)    
Predicted Functional Partners:
loxhd1
Lipoxygenase homology domains 1a.
    
 0.709
I3J890_ORENI
ATP/GTP binding protein-like 1.
      
 0.700
SLC4A11
Solute carrier family 4 member 11.
      
 0.627
slc4a11
Solute carrier family 4 member 11.
      
 0.627
I3KIR3_ORENI
LAM_G_DOMAIN domain-containing protein.
 
  
  0.580
zeb1
Zinc finger E-box binding homeobox 1b.
      
 0.499
I3K320_ORENI
LAM_G_DOMAIN domain-containing protein.
 
  
  0.496
nt5dc1
5'-nucleotidase domain containing 1.
      
 0.470
LOC100693347
C1q domain-containing protein.
  
  
 
0.431
COL8A1
Collagen type VIII alpha 1 chain.
  
  
 
0.430
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.