STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arrdc3Arrestin domain containing 3a. (412 aa)    
Predicted Functional Partners:
I3JEG4_ORENI
NEDD4 E3 ubiquitin protein ligase a.
    
 
 0.810
nedd4l
NEDD4 like E3 ubiquitin protein ligase.
    
 
 0.810
AQP4
Aquaporin 4; Belongs to the MIP/aquaporin (TC 1.A.8) family.
      
 0.624
LOC100698963
Aquaporin 4; Belongs to the MIP/aquaporin (TC 1.A.8) family.
      
 0.624
LOC100690837
Thioredoxin; Belongs to the thioredoxin family.
    
 0.603
LOC100692536
Thioredoxin; Belongs to the thioredoxin family.
    
 0.603
LOC100692805
Thioredoxin; Belongs to the thioredoxin family.
    
 0.603
aqp10
Aquaporin 10b; Belongs to the MIP/aquaporin (TC 1.A.8) family.
      
 0.532
ergic1
Endoplasmic reticulum-golgi intermediate compartment 1.
      
 0.477
lcmt2
Leucine carboxyl methyltransferase 2.
      
 0.469
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.