STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm18RNA binding motif protein 18. (200 aa)    
Predicted Functional Partners:
tmod3
Tropomodulin 2.
    
 
 0.523
fam32a
Family with sequence similarity 32 member A.
      
 0.516
supt7l
SPT7 like, STAGA complex gamma subunit.
   
  
 0.474
syf2
SYF2 pre-mRNA-splicing factor.
      
 0.473
cmtr1
Cap methyltransferase 1.
      
 0.445
I3KDG2_ORENI
U-box domain containing 5.
      
 0.442
ppp1r7
Protein phosphatase 1, regulatory (inhibitor) subunit 7.
      
 0.437
dctn3
Dynactin 3 (p22).
      
 0.431
I3KN33_ORENI
Zinc finger, matrin-type 2.
      
 0.426
SYDE2
Synapse defective Rho GTPase homolog 2.
      
 0.424
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.