supt7l protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

supt7l

SPT7 like, STAGA complex gamma subunit. (536 aa)

Predicted Functional Partners:

taf10

0.972

trrap

0.970

supt3h

0.965

taf6l

0.964

supt20h

0.962

taf12

0.944

LOC100695096

0.938

tada2b

0.926

tada3

0.894

sgf29

0.885

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100695096	sgf29	ENSONIP00000017520	ENSONIP00000011784	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SAGA complex associated factor 29.	0.997
LOC100695096	supt20h	ENSONIP00000017520	ENSONIP00000015856	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SPT20 homolog, SAGA complex component.	0.989
LOC100695096	supt3h	ENSONIP00000017520	ENSONIP00000058665	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SPT3 homolog, SAGA and STAGA complex component.	0.996
LOC100695096	supt7l	ENSONIP00000017520	ENSONIP00000041797	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SPT7 like, STAGA complex gamma subunit.	0.938
LOC100695096	tada2b	ENSONIP00000017520	ENSONIP00000039318	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcriptional adapter.	0.967
LOC100695096	tada3	ENSONIP00000017520	ENSONIP00000025614	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.998
LOC100695096	taf10	ENSONIP00000017520	ENSONIP00000002566	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
LOC100695096	taf12	ENSONIP00000017520	ENSONIP00000020370	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
LOC100695096	taf6l	ENSONIP00000017520	ENSONIP00000049941	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.962
LOC100695096	trrap	ENSONIP00000017520	ENSONIP00000078887	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.	0.999
sgf29	LOC100695096	ENSONIP00000011784	ENSONIP00000017520	SAGA complex associated factor 29.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.997
sgf29	supt20h	ENSONIP00000011784	ENSONIP00000015856	SAGA complex associated factor 29.	SPT20 homolog, SAGA complex component.	0.997
sgf29	supt3h	ENSONIP00000011784	ENSONIP00000058665	SAGA complex associated factor 29.	SPT3 homolog, SAGA and STAGA complex component.	0.996
sgf29	supt7l	ENSONIP00000011784	ENSONIP00000041797	SAGA complex associated factor 29.	SPT7 like, STAGA complex gamma subunit.	0.885
sgf29	tada2b	ENSONIP00000011784	ENSONIP00000039318	SAGA complex associated factor 29.	Transcriptional adapter.	0.969
sgf29	tada3	ENSONIP00000011784	ENSONIP00000025614	SAGA complex associated factor 29.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.997
sgf29	taf10	ENSONIP00000011784	ENSONIP00000002566	SAGA complex associated factor 29.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.995
sgf29	taf12	ENSONIP00000011784	ENSONIP00000020370	SAGA complex associated factor 29.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.998
sgf29	taf6l	ENSONIP00000011784	ENSONIP00000049941	SAGA complex associated factor 29.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.950
sgf29	trrap	ENSONIP00000011784	ENSONIP00000078887	SAGA complex associated factor 29.	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.	0.997