STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100711647Poly [ADP-ribose] polymerase. (1285 aa)    
Predicted Functional Partners:
RNF146
Ring finger protein 146.
    
 0.851
LOC100711905
Ring finger protein 146.
    
 0.824
LOC100695880
Uncharacterized protein.
    
 0.780
LOC100697931
Axin 1.
    
 0.780
AXIN2
Axin 2.
    
 0.780
LOC100698792
Axin 2 (conductin, axil).
    
 0.780
wdr5
WD repeat domain 5.
   
 0.630
hif1an
Hypoxia inducible factor 1 alpha subunit inhibitor.
    
 
 0.616
l1cam
L1 cell adhesion molecule, paralog a.
    
 0.613
Clrn1
Clarin 1.
      
 0.598
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.