STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsnaxip1Translin-associated factor X-interacting protein 1 isoform X1. (405 aa)    
Predicted Functional Partners:
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 0.697
fancm
Uncharacterized protein.
    
 0.686
I3JV04_ORENI
Translocase of outer mitochondrial membrane 20.
    
 0.683
arid4a
AT rich interactive domain 4A (RBP1-like).
    
 0.683
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 0.681
actr5
Actin related protein 5; Belongs to the actin family.
    
 0.664
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
   
 0.663
cfap74
Uncharacterized protein.
    
 
 0.662
tekt3
Tektin 3.
   
    0.661
ankef1
Ankyrin repeat and EF-hand domain containing 1a.
   
  0.658
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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