STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100704001Surfactant protein Bb. (100 aa)    
Predicted Functional Partners:
tmem130
Transmembrane protein 130.
   
 0.692
gba
Glucosylceramidase.
   
 0.692
I3JW33_ORENI
Galactosylceramidase b.
    
 
 0.628
GALC
Glyco_hydro_59M domain-containing protein.
    
 
 0.628
chid1
Chitinase domain containing 1; Belongs to the glycosyl hydrolase 18 family.
     
 0.626
gpr37
G protein-coupled receptor 37b.
     
 0.609
I3IVJ0_ORENI
G protein-coupled receptor 37 like 1a.
     
 0.609
LOC100702108
G protein-coupled receptor 37a.
     
 0.609
LOC100707183
G protein-coupled receptor 37 like 1b.
     
 0.609
lamp1
Lysosomal associated membrane protein 1a.
   
  
 0.557
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.