STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
brapBRCA1 associated protein. (598 aa)    
Predicted Functional Partners:
ENSONIP00000047919
Ubiquitin B.
 
  
 0.971
brca1
Uncharacterized protein.
    
 
 0.739
rps27a
Ribosomal protein S27a.
    
 0.699
I3J0S2_ORENI
Kinase suppressor of ras 1a.
    
 0.613
ksr2
Kinase suppressor of ras 2.
    
 0.613
I3KC05_ORENI
Kinase suppressor of ras 1b.
    
 0.613
rps25
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
      
 0.610
cstf1
Cleavage stimulation factor, 3' pre-RNA, subunit 1.
      
 0.578
I3KAX8_ORENI
Ataxin 2.
 
    
 0.550
I3J5I6_ORENI
BRCA1-associated ATM activator 1.
      
 0.542
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.