LOC100696908 protein (Oreochromis niloticus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100696908

Uncharacterized protein. (660 aa)

Predicted Functional Partners:

lin37

0.936

lin9

0.936

lin52

0.933

lin54

0.924

LOC100710529

0.924

LOC100706337

0.917

LOC100711479

0.917

LOC100695351

0.917

cenpf

0.799

ccna2

0.745

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100695351	LOC100696908	ENSONIP00000079377	ENSONIP00000046504	Retinoblastoma binding protein 4, like.	Uncharacterized protein.	0.917
LOC100695351	LOC100706337	ENSONIP00000079377	ENSONIP00000038174	Retinoblastoma binding protein 4, like.	WD_REPEATS_REGION domain-containing protein.	0.900
LOC100695351	LOC100710529	ENSONIP00000079377	ENSONIP00000050935	Retinoblastoma binding protein 4, like.	Protein lin-54 homolog isoform X1.	0.983
LOC100695351	LOC100711479	ENSONIP00000079377	ENSONIP00000070642	Retinoblastoma binding protein 4, like.	Retinoblastoma binding protein 4.	0.900
LOC100695351	lin37	ENSONIP00000079377	ENSONIP00000003440	Retinoblastoma binding protein 4, like.	Lin-37 DREAM MuvB core complex component.	0.992
LOC100695351	lin52	ENSONIP00000079377	ENSONIP00000051726	Retinoblastoma binding protein 4, like.	Protein lin-52 homolog.	0.987
LOC100695351	lin54	ENSONIP00000079377	ENSONIP00000019377	Retinoblastoma binding protein 4, like.	Lin-54 DREAM MuvB core complex component.	0.983
LOC100695351	lin9	ENSONIP00000079377	ENSONIP00000052246	Retinoblastoma binding protein 4, like.	Lin-9 DREAM MuvB core complex component.	0.992
LOC100696908	LOC100695351	ENSONIP00000046504	ENSONIP00000079377	Uncharacterized protein.	Retinoblastoma binding protein 4, like.	0.917
LOC100696908	LOC100706337	ENSONIP00000046504	ENSONIP00000038174	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.917
LOC100696908	LOC100710529	ENSONIP00000046504	ENSONIP00000050935	Uncharacterized protein.	Protein lin-54 homolog isoform X1.	0.924
LOC100696908	LOC100711479	ENSONIP00000046504	ENSONIP00000070642	Uncharacterized protein.	Retinoblastoma binding protein 4.	0.917
LOC100696908	ccna2	ENSONIP00000046504	ENSONIP00000001689	Uncharacterized protein.	Cyclin A2; Belongs to the cyclin family.	0.745
LOC100696908	cenpf	ENSONIP00000046504	ENSONIP00000021547	Uncharacterized protein.	Centromere protein F.	0.799
LOC100696908	lin37	ENSONIP00000046504	ENSONIP00000003440	Uncharacterized protein.	Lin-37 DREAM MuvB core complex component.	0.936
LOC100696908	lin52	ENSONIP00000046504	ENSONIP00000051726	Uncharacterized protein.	Protein lin-52 homolog.	0.933
LOC100696908	lin54	ENSONIP00000046504	ENSONIP00000019377	Uncharacterized protein.	Lin-54 DREAM MuvB core complex component.	0.924
LOC100696908	lin9	ENSONIP00000046504	ENSONIP00000052246	Uncharacterized protein.	Lin-9 DREAM MuvB core complex component.	0.936
LOC100706337	LOC100695351	ENSONIP00000038174	ENSONIP00000079377	WD_REPEATS_REGION domain-containing protein.	Retinoblastoma binding protein 4, like.	0.900
LOC100706337	LOC100696908	ENSONIP00000038174	ENSONIP00000046504	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.917