STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100698506Aspartoacylase (aminocyclase) 3, tandem duplicate 2. (319 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.776
rnf7
Ring finger protein 7.
    
 0.730
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.730
mrpl2
Mitochondrial ribosomal protein L2.
    
 0.707
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.631
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.606
I3JVM5_ORENI
CDK2 associated cullin domain 1; Belongs to the cullin family.
    
 0.606
cul1
Cullin 1b; Belongs to the cullin family.
    
 0.606
LOC109194151
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.606
trip12
Thyroid hormone receptor interactor 12.
   
 0.563
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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