STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Serp2Stress-associated endoplasmic reticulum protein 2. (77 aa)    
Predicted Functional Partners:
Sec61b
Protein transport protein SEC61 subunit beta.
   
 
 0.678
I3JK34_ORENI
Small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha.
    
 0.513
sgtb
Small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta.
    
 0.513
sec61g
SEC61 translocon gamma subunit.
   
 
 0.500
Stx5
Syntaxin 5A; Belongs to the syntaxin family.
     
 0.496
Ttc33
Tetratricopeptide repeat domain 33.
    
 0.483
ube2j2
Ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast).
     
 0.453
get1
Guided entry of tail-anchored proteins factor 1.
     
 0.436
c1qtnf12
C1q and TNF related 12.
     
 0.431
LOC100697360
Cytochrome b5 type A (microsomal); Belongs to the cytochrome b5 family.
     
 0.422
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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