STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100710371Otolin 1a. (547 aa)    
Predicted Functional Partners:
OTOP1
Otopetrin 1.
      
 0.704
LOC100706732
Otolith matrix protein.
      
 0.695
ENSONIP00000037934
Si:ch211-220f12.4.
      
 0.589
Oc90
Otoconin-90 isoform X5.
      
 0.589
rps6kc1
Ribosomal protein S6 kinase polypeptide 1.
      
 0.588
LOC100693338
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
      
 0.588
gpcpd1
Glycerophosphocholine phosphodiesterase 1.
      
 0.571
LOC100693466
SPARC-like 1.
      
 0.537
optn
Optineurin.
      
 0.510
LYPD6
LY6/PLAUR domain containing 6.
      
 0.499
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.