STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100704314Zinc fingers and homeoboxes 3. (1141 aa)    
Predicted Functional Partners:
cactin
Cactin.
    
 0.608
TIMM22
Translocase of inner mitochondrial membrane 22.
    
 0.608
dhx35
DEAH-box helicase 35.
    
 
 0.595
rab5if
RAB5 interacting factor.
      
 0.585
zhx2
Zinc fingers and homeoboxes 2a.
      
0.585
Nfya
Nuclear transcription factor Y subunit alpha isoform X6.
    
 
 0.580
timm10
Translocase of inner mitochondrial membrane 10 homolog (yeast).
   
 0.572
rpn2
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the en [...]
      
 0.497
btbd9
BTB (POZ) domain containing 9.
      
 0.476
GGT7
Gamma-glutamyltransferase 7.
      
 0.468
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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