STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSDE1Cold shock domain containing E1, RNA-binding. (873 aa)    
Predicted Functional Partners:
ENSONIP00000000682
Intersectin 2a.
    
 0.821
I3KKD0_ORENI
Intersectin 2b.
    
 0.821
rasa1
RAS p21 protein activator (GTPase activating protein) 1a.
   
 0.815
Nf1
Neurofibromin 1b.
    
 0.778
I3JW49_ORENI
A-Raf proto-oncogene, serine/threonine kinase.
   
 0.764
braf
B-Raf proto-oncogene serine/threonine-protein kinase.
   
 0.764
raf1
Raf-1 proto-oncogene, serine/threonine kinase a.
   
 0.764
ralgds
Ral guanine nucleotide dissociation stimulator.
   
 0.738
LOC100700084
Ral guanine nucleotide dissociation stimulator-like 2.
   
 0.738
rgl1
Ral guanine nucleotide dissociation stimulator-like 1.
   
 0.738
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.