STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf41Ring finger protein 41. (318 aa)    
Predicted Functional Partners:
usp8
Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.
    
 0.984
LOC100711613
Receptor protein-tyrosine kinase.
    
 0.878
egfr
Receptor protein-tyrosine kinase.
    
 0.878
Birc6
Baculoviral IAP repeat containing 6.
    
 0.864
rps27a
Ribosomal protein S27a.
    
 0.824
asb6
Ankyrin repeat and SOCS box containing 6.
   
 0.821
LOC100695864
Ubiquitin carboxyl-terminal hydrolase.
    
 0.821
LOC100694066
Ubiquitin carboxyl-terminal hydrolase 21.
    
 0.821
LOC100708948
USP domain-containing protein; Belongs to the peptidase C19 family.
    
 0.821
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.802
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.