STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSBP4Single stranded DNA binding protein 4. (350 aa)    
Predicted Functional Partners:
I3IYF2_ORENI
LIM domain binding 2a.
   
 
 0.637
I3JSU9_ORENI
LIM domain binding 1a.
   
 
 0.637
LOC100706951
LIM-domain binding 1b.
   
 
 0.637
LOC100708633
Carboxypeptidase A1 (pancreatic).
      
 0.613
erp27
Uncharacterized protein.
      
 0.584
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
  
 0.496
LOC100695408
Period circadian clock 1b.
      
 0.481
ctrl
Zgc:171592; Belongs to the peptidase S1 family.
      
 0.480
PER2
Period circadian regulator 2.
      
 0.476
lhx4
LIM homeobox 4.
    
 
 0.444
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.