STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdm6aLysine (K)-specific demethylase 6A. (1450 aa)    
Predicted Functional Partners:
rbbp5
Retinoblastoma binding protein 5.
    
 0.958
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.955
atp5f1d
ATP synthase F1 subunit delta.
  
 0.941
ATP6
ATP synthase subunit a.
  
 0.939
atp5f1c
ATP synthase subunit gamma.
  
 0.927
Birc6
Baculoviral IAP repeat containing 6.
   
 0.925
atp5po
ATP synthase peripheral stalk subunit OSCP.
  
 0.925
myd88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
   
 0.907
LOC100691280
Histone H3; Belongs to the histone H3 family.
   
 0.907
ENSONIP00000032574
annotation not available
   
 0.907
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.