STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100691058Tpd52 like 2a. (203 aa)    
Predicted Functional Partners:
gabpb2
GA binding protein transcription factor subunit beta 2a.
    
  0.530
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
     
 0.528
tpd52
Tumor protein D52.
    
  
0.524
mal2
Mal, T cell differentiation protein 2 (gene/pseudogene).
   
 
 0.484
Nub1
Negative regulator of ubiquitin-like proteins 1.
      
 0.478
snx6
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 
  0.468
snx5
Sorting nexin; Involved in several stages of intracellular trafficking.
   
 
  0.468
pyroxd2
Pyridine nucleotide-disulphide oxidoreductase domain 2.
      
 0.448
ppp5c
Serine/threonine-protein phosphatase.
      
 0.434
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.