STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EBF1EBF transcription factor 1. (671 aa)    
Predicted Functional Partners:
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.563
Plaa
Phospholipase A2-activating protein.
    
   0.527
ENSONIP00000045390
Ubiquitin thioesterase OTU1-like.
    
   0.520
LOC100690469
Ubiquitin thioesterase OTU1 isoform X1.
    
   0.520
I3JWG9_ORENI
Nuclear receptor subfamily 2, group F, member 6a.
     
 0.510
meis1
Meis homeobox 1 b.
      
 0.497
LOC100705918
TGFB-induced factor homeobox 1.
      
 0.486
hnf4a
Hepatocyte nuclear factor 4, alpha.
      
 0.482
LOC100692377
Homeobox A11b.
      
 0.476
hoxa11
Homeobox A11a.
      
 0.476
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.