STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I3JQ94_ORENIPlexin b2b. (1853 aa)    
Predicted Functional Partners:
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.656
LOC100697755
Si:ch211-129c21.1; Belongs to the semaphorin family.
    
 0.623
LOC100709840
Semaphorin 4e; Belongs to the semaphorin family.
    
0.623
LOC100703339
Sema domain-containing protein; Belongs to the semaphorin family.
    
 0.623
SEMA4D
Semaphorin 4D; Belongs to the semaphorin family.
    
 0.623
LOC100703109
Sema domain-containing protein.
    
0.586
sema5a
Sema domain-containing protein.
    
0.586
sema5b
Sema domain-containing protein.
    
 0.586
rnd3
Rho family GTPase 3a.
    
 0.581
LOC100705424
Rho family GTPase 1b.
    
 0.581
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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