STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
otud6bOTU domain containing 6B. (315 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
   
 
 0.711
trip12
Thyroid hormone receptor interactor 12.
      
 0.702
usp14
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.613
usp10
Ubiquitin carboxyl-terminal hydrolase.
      
 0.595
uchl1
Ubiquitin carboxyl-terminal hydrolase.
      
 0.592
cops5
COP9 signalosome subunit 5.
   
  
 0.587
usp7
Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family.
   
  
 0.586
usp8
Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.
   
  
 0.582
usp45
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.576
ENSONIP00000045390
Ubiquitin thioesterase OTU1-like.
      
 0.567
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.