STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TIMP3TIMP metallopeptidase inhibitor 3. (285 aa)    
Predicted Functional Partners:
LOC100700935
ADAM metallopeptidase domain 17a.
    
 0.878
LOC100692440
ADAM metallopeptidase domain 17b.
    
 0.878
mmp9
Matrix metallopeptidase 9.
   
 0.872
mmp15
Matrix metallopeptidase 15b.
   
 0.773
mmp13
Matrix metallopeptidase 13b.
   
 0.654
LOC100708330
Matrix metallopeptidase 20a (enamelysin).
   
 0.654
I3KM92_ORENI
ZnMc domain-containing protein.
   
 0.654
LOC100711125
ZnMc domain-containing protein.
   
 0.654
mmp2
Matrix metallopeptidase 2.
   
 0.654
LOC106097969
Matrix metalloproteinase-20 (enamelysin).
   
 0.654
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.