STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDH4Cadherin 4; Cadherins are calcium-dependent cell adhesion proteins. (948 aa)    
Predicted Functional Partners:
LOC100702438
Cadherin 4, type 1, R-cadherin (retinal); Cadherins are calcium-dependent cell adhesion proteins.
  
  
 
0.901
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.783
LOC100695750
Catenin (cadherin-associated protein), delta 1.
    
 0.764
CTNND1
Catenin delta 1.
    
 0.764
ctnna2
Catenin (cadherin-associated protein), alpha 2.
    
 0.746
LOC100707214
Junction plakoglobin a.
   
 0.627
LOC100701331
Uncharacterized protein.
   
 0.627
ARVCF
ARVCF delta catenin family member b.
    
 0.624
cdc42
Cell division cycle 42.
    
 0.599
LOC100693960
Uncharacterized protein.
   
 0.595
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.