STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snx16Sorting nexin 16. (391 aa)    
Predicted Functional Partners:
pitx1
Homeobox protein.
      
 0.767
ripk2
Receptor-interacting serine-threonine kinase 2.
    
 0.764
LOC102081495
Leucine-rich repeats and transmembrane domains 2a.
      
 0.717
Vps26a
VPS26, retromer complex component A.
   
 
 0.514
LOC100701023
WW domain containing E3 ubiquitin protein ligase 1.
    
 0.491
snx17
Sorting nexin 17.
      
 0.479
snx15
Sorting nexin 15.
     
 0.476
LOC102083204
Uncharacterized protein.
    
 
 0.457
LOC100710078
Si:ch211-176g13.8.
    
 
 0.457
FCHSD2
FCH and double SH3 domains 2.
    
 
 0.457
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.