STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100708723C-C chemokine receptor type 6-like. (379 aa)    
Predicted Functional Partners:
ENSONIP00000048599
C-C motif chemokine 20.
    
 0.966
LOC100700696
C-C motif chemokine 20.
    
  0.904
LOC100699713
SCY domain-containing protein.
     
  0.901
LOC109195824
C-C chemokine receptor type 6.
  
  
 
0.901
LOC100694868-2
FGFR1 oncogene partner; Belongs to the G-protein coupled receptor 1 family.
  
  
 
0.901
LOC100702962
SCY domain-containing protein.
     
  0.900
ENSONIP00000040199
annotation not available
    
 0.754
ENSONIP00000079689
annotation not available
    
 0.754
cxcr5
Chemokine (C-X-C motif) receptor 5; Belongs to the G-protein coupled receptor 1 family.
  
 
0.520
LOC100695280
Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.440
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.