STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100708021Splicing factor U2AF 35 kDa subunit. (228 aa)    
Predicted Functional Partners:
LOC100708876
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.994
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.946
LOC100710001
U2 small nuclear RNA auxiliary factor 1.
  
  
 
0.901
LOC100710640
Serine and arginine rich splicing factor 2a.
   
0.787
LOC100695205
RRM domain-containing protein.
   
 0.787
I3J8X5_ORENI
RRM domain-containing protein.
   
 0.749
SRSF3
Serine and arginine rich splicing factor 3b.
   
 0.749
snrnp35
Small nuclear ribonucleoprotein 35 (U11/U12).
   
 0.738
ENSONIP00000006112
annotation not available
   
 0.737
I3JB75_ORENI
Uncharacterized protein.
   
 0.737
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
Server load: low (22%) [HD]