STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abt1Activator of basal transcription 1. (323 aa)    
Predicted Functional Partners:
rrp36
Ribosomal RNA processing 36.
   
 
 0.993
Ddx10
RNA helicase.
   
 
 0.989
utp25
UTP25 small subunit processor component.
   
 
 0.989
bysl
Bystin-like.
   
 
 0.988
ddx49
DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.
   
 
 0.985
nop14
NOP14 nucleolar protein homolog (yeast).
   
 
 0.985
esf1
ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).
   
 
 0.983
utp18
WD_REPEATS_REGION domain-containing protein.
   
 
 0.980
utp6
UTP6 small subunit processome component.
   
 
 0.974
wdr3
WD repeat domain 3.
   
 
 0.954
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.