STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cgrrf1Cell growth regulator with ring finger domain 1. (327 aa)    
Predicted Functional Partners:
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
      
 0.567
ube2j1
Ubiquitin-conjugating enzyme E2, J1.
    
 0.479
LOC100709059
Ring finger protein 170.
      
 0.463
c1qtnf12
C1q and TNF related 12.
      
 0.454
ube2j2
Ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast).
      
 0.454
UBA3
Ubiquitin like modifier activating enzyme 3.
     
 0.432
LOC100707169
Ubiquitin-like modifier activating enzyme 3.
     
 0.432
ube2g2
Ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.
      
 0.429
LOC100690679
Family with sequence similarity 8 member A1b.
      
 0.428
LOC100709240
Family with sequence similarity 8 member A1a.
      
 0.428
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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