STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbx3T-box transcription factor 3a. (715 aa)    
Predicted Functional Partners:
hoxd9
Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.
    
 
 0.562
Vax2
Ventral anterior homeobox 2.
     
 0.547
ALX3
ALX homeobox 3.
   
 0.508
LOC100708914
Aryl hydrocarbon receptor nuclear translocator.
    
 
 0.492
LOC100696580
Opsin 4a (melanopsin).
      
 0.489
LOC100690289
Opsin 4xb.
      
 0.489
LOC100707262
Opsin 4b.
      
 0.489
spry1
Protein sprouty homolog 1.
      
 0.483
nkx2-5
NK2 homeobox 5.
   
 
 0.472
meis2
Meis homeobox 2a.
   
  
 0.468
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.