STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100710973Sorcin-like. (210 aa)    
Predicted Functional Partners:
slc26a5
Solute carrier family 26 member 5.
      
 0.674
cast
Calpastatin isoform X5.
   
 0.614
LOC100707167
Calbindin 2b.
   
  
 0.589
calml4
Calmodulin-like 4a.
   
  
 0.493
LOC100701793
Calmodulin-like 4b.
   
  
 0.493
calm1
Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.
   
  
 0.493
CALB2
Calbindin 2a.
   
  
 0.490
ENSONIP00000073744
Neurogenin 3.
   
  
 0.483
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
    0.479
ankrd40
Ankyrin repeat domain 40.
    
 
 0.435
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.