STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I3L053_ORENIUncharacterized protein. (134 aa)    
Predicted Functional Partners:
gtf2b
General transcription factor IIB.
   
 0.915
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
   
 0.912
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.909
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.909
LOC100695096
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.909
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.909
taf7l
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.909
taf1
Transcription initiation factor TFIID subunit.
    
 0.909
bdp1
Transcription factor TFIIIB component B'' homolog isoform X1.
    
 0.907
POLR2E
RNA polymerase II subunit E.
    
 0.905
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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