ncam1 protein (Oreochromis niloticus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ncam1

Neural cell adhesion molecule 1b. (911 aa)

Predicted Functional Partners:

LOC100694804

0.901

I3JJV2_ORENI

0.900

ncam2

0.900

LOC100710479

0.640

st8sia2

0.620

Cntn2

0.582

agrn

0.546

LOC100695628

0.532

CD9

0.522

B3GAT1

0.522

Your Current Organism:

Oreochromis niloticus

NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3GAT1	ncam1	ENSONIP00000043659	ENSONIP00000069461	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase; Belongs to the glycosyltransferase 43 family.	Neural cell adhesion molecule 1b.	0.522
CD9	ncam1	ENSONIP00000012495	ENSONIP00000069461	Tetraspanin.	Neural cell adhesion molecule 1b.	0.522
Cntn2	I3JJV2_ORENI	ENSONIP00000006395	ENSONIP00000009146	Contactin 2.	Neural cell adhesion molecule 3.	0.582
Cntn2	LOC100694804	ENSONIP00000006395	ENSONIP00000042820	Contactin 2.	Neural cell adhesion molecule 1a.	0.582
Cntn2	LOC100695628	ENSONIP00000006395	ENSONIP00000052870	Contactin 2.	Neurocan core protein.	0.448
Cntn2	ncam1	ENSONIP00000006395	ENSONIP00000069461	Contactin 2.	Neural cell adhesion molecule 1b.	0.582
Cntn2	ncam2	ENSONIP00000006395	ENSONIP00000076300	Contactin 2.	Zgc:152904.	0.582
I3JJV2_ORENI	Cntn2	ENSONIP00000009146	ENSONIP00000006395	Neural cell adhesion molecule 3.	Contactin 2.	0.582
I3JJV2_ORENI	LOC100694804	ENSONIP00000009146	ENSONIP00000042820	Neural cell adhesion molecule 3.	Neural cell adhesion molecule 1a.	0.900
I3JJV2_ORENI	LOC100695628	ENSONIP00000009146	ENSONIP00000052870	Neural cell adhesion molecule 3.	Neurocan core protein.	0.532
I3JJV2_ORENI	LOC100710479	ENSONIP00000009146	ENSONIP00000020669	Neural cell adhesion molecule 3.	GDNF family receptor alpha-1; Receptor for GDNF. Mediates the GDNF-induced autophosphorylation and activation of the RET receptor. Belongs to the GDNFR family.	0.512
I3JJV2_ORENI	agrn	ENSONIP00000009146	ENSONIP00000028345	Neural cell adhesion molecule 3.	Agrin.	0.546
I3JJV2_ORENI	ncam1	ENSONIP00000009146	ENSONIP00000069461	Neural cell adhesion molecule 3.	Neural cell adhesion molecule 1b.	0.900
I3JJV2_ORENI	ncam2	ENSONIP00000009146	ENSONIP00000076300	Neural cell adhesion molecule 3.	Zgc:152904.	0.900
I3JJV2_ORENI	st8sia2	ENSONIP00000009146	ENSONIP00000019061	Neural cell adhesion molecule 3.	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2; Belongs to the glycosyltransferase 29 family.	0.620
LOC100694804	Cntn2	ENSONIP00000042820	ENSONIP00000006395	Neural cell adhesion molecule 1a.	Contactin 2.	0.582
LOC100694804	I3JJV2_ORENI	ENSONIP00000042820	ENSONIP00000009146	Neural cell adhesion molecule 1a.	Neural cell adhesion molecule 3.	0.900
LOC100694804	LOC100695628	ENSONIP00000042820	ENSONIP00000052870	Neural cell adhesion molecule 1a.	Neurocan core protein.	0.532
LOC100694804	LOC100710479	ENSONIP00000042820	ENSONIP00000020669	Neural cell adhesion molecule 1a.	GDNF family receptor alpha-1; Receptor for GDNF. Mediates the GDNF-induced autophosphorylation and activation of the RET receptor. Belongs to the GDNFR family.	0.512
LOC100694804	agrn	ENSONIP00000042820	ENSONIP00000028345	Neural cell adhesion molecule 1a.	Agrin.	0.546