STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf18PRP18 pre-mRNA processing factor 18 homolog (yeast). (350 aa)    
Predicted Functional Partners:
slu7
SLU7 homolog, splicing factor.
  
 0.998
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.991
bud31
BUD31 homolog.
    
 
 0.986
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 0.969
Cwc22
MI domain-containing protein.
   
 0.960
WDR25
WD repeat domain 25.
   
 0.949
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
    
 0.949
yju2
YJU2 splicing factor homolog.
    
 0.939
cwc25
CWC25 spliceosome associated protein homolog.
    
 0.939
syf2
SYF2 pre-mRNA-splicing factor.
   
 0.937
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.