STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100694505Uncharacterized protein. (1643 aa)    
Predicted Functional Partners:
LOC100695509
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.959
LOC100697359
Uncharacterized protein.
    
 0.959
Rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.959
LOC100692890
RAN binding protein 2.
   
 0.838
zfand4
Zinc finger, AN1-type domain 4.
    
 0.704
gapvd1
GTPase activating protein and VPS9 domains 1.
    
 0.691
I3ITT5_ORENI
Exportin 1 (CRM1 homolog, yeast) a.
    
 
 0.629
LOC100707731
Radial spoke head component 4A.
    
 
 0.629
xpo5
Exportin 5.
    
 
 0.629
xpo6
Exportin 6.
    
 
 0.629
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.