STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CERT1-2Ceramide transporter 1. (622 aa)    
Predicted Functional Partners:
LOC100700366
Casein kinase 1 gamma 2; Belongs to the protein kinase superfamily.
    
 0.582
LOC100701968
Casein kinase 1, gamma 2a; Belongs to the protein kinase superfamily.
    
 0.582
csnk1g1
Casein kinase 1, gamma 1; Belongs to the protein kinase superfamily.
    
 0.582
LOC100694532
Collagen, type I, alpha 1b.
      
 0.480
Col13a1
Uncharacterized protein.
      
 0.480
lama4
Laminin, alpha 4.
      
 0.477
fndc3a
Fibronectin type III domain containing 3A.
      
 0.477
COL6A3
Collagen type VI alpha 3 chain.
      
 0.461
stard3
StAR-related lipid transfer (START) domain containing 3.
      
 0.440
vapb
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 0.440
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.