STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100694066Ubiquitin carboxyl-terminal hydrolase 21. (404 aa)    
Predicted Functional Partners:
ripk1
Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.
    
 0.969
ENSONIP00000047919
Ubiquitin B.
   
 0.875
rnf41
Ring finger protein 41.
    
 0.821
hgs
Hepatocyte growth factor-regulated tyrosine kinase substrate.
   
 0.765
rps27a
Ribosomal protein S27a.
    
 0.758
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
 0.754
stam
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.
    
 0.714
stam2
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2.
    
 0.714
gata3
GATA binding protein 3.
    
 0.647
chmp3
Charged multivesicular body protein 3.
    
 
 0.590
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.