STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSONIP00000073858Ras-related protein ORAB-1. (215 aa)    
Predicted Functional Partners:
Lg19h9orf72
Zgc:100846.
    
 0.928
trappc3
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
 0.920
trappc1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.916
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.901
LOC100696366
Uncharacterized protein.
  
  
 
0.901
LOC100707666
Uncharacterized protein.
  
  
 
0.900
trappc8
Trafficking protein particle complex 8.
    
 0.897
uso1
USO1 vesicle transport factor.
   
 0.884
TRAPPC2
Trafficking protein particle complex 2.
    
 0.867
Stx5
Syntaxin 5A; Belongs to the syntaxin family.
    
 0.821
Your Current Organism:
Oreochromis niloticus
NCBI taxonomy Id: 8128
Other names: Nile tilapia, O. niloticus, Oreochromis nilotica, Tilapia nilotica
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